Minor If an error has occurred during running TopHat and it hasn't provided "accepted_hits.bam" output (i.e. it is either absent or empty), then the rest tools of the pipeline shouldn't be launched.
If an error has occurred during running TopHat and it hasn't provided "accepted_hits.bam" output (i.e. it is either absent or empty), then the rest tools of the pipeline shouldn't be launched.
