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  1. UGENE
  2. UGENE-2408

Speed up an export of shortreads from fastq to fasta format

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Major
    • Resolution: Won't Fix
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: None
    • Labels:
      None
    • Sprint:
      DEV-2013/11/14

      Description

      1. Download the file "https://ugene.unipro.ru/svn/ugene/UGENE-NIAID/XmlTests/Tuxedo/_input/niaid_sample/original_files/lymph_aln.fastq"
      2. Open it as separate sequences
      Expected state: it takes a few minutes, then the file has appeared in sequence view
      3. Export it to another file in fasta format using the context menu in project view
      Expected state: export operation has taken approximately the same time as the source file opening
      Current state: it takes ~ as 2 times as the opening

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            Assignee:
            iprotsyuk Ivan Protsyuk
            Reporter:
            iprotsyuk Ivan Protsyuk
            Watchers:
            1 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved:

                Time Tracking

                Estimated:
                Original Estimate - 1 day
                1d
                Remaining:
                Remaining Estimate - 5 hours
                5h
                Logged:
                Time Spent - Not Specified Time Not Required
                Not Specified