Blocker An error occurs:
INFO @ Wed, 29 Jan 2014 18:18:20: number of bed files: 1 INFO @ Wed, 29 Jan 2014 18:18:20: extract phastcons scores using E:\test_cistr\MACS\NA_summits.bed INFO @ Wed, 29 Jan 2014 18:18:20: read bed file... INFO @ Wed, 29 Jan 2014 18:18:20: extract chromosome chr4 Traceback (most recent call last): File "C:\Program Files\Unipro UGENE\tools\cistrome\conservation_plot\conservation_plot.py", line 263, in <module> main() File "C:\Program Files\Unipro UGENE\tools\cistrome\conservation_plot\conservation_plot.py", line 143, in main makeBmpFile(avgValues,olddir,options.height,options.width,options.w,options.title,bedlabel) File "C:\Program Files\Unipro UGENE\tools\cistrome\conservation_plot\conservation_plot.py", line 258, in makeBmpFile data = subprocess.call(['Rscript',fileName+'.R']) File "C:\Python27\lib\subprocess.py", line 486, in call return Popen(*popenargs, **kwargs).wait() File "C:\Python27\lib\subprocess.py", line 672, in __init__ errread, errwrite) File "C:\Python27\lib\subprocess.py", line 882, in _execute_child startupinfo) WindowsError: [Error 2] The system cannot find the file specified
Correction: The error above occurs if there is no Rscript in the PATH. The following error occurs when it is:
INFO @ Wed, 29 Jan 2014 21:05:23: number of bed files: 1 INFO @ Wed, 29 Jan 2014 21:05:23: extract phastcons scores using E:\test_cistr\MACS\NA_peaks.bed INFO @ Wed, 29 Jan 2014 21:05:23: read bed file... INFO @ Wed, 29 Jan 2014 21:05:23: extract chromosome chr4 Error: unexpected symbol in "plot(x,y0,type="l",col=rainbow(1)[1],main=Average Phastcons" Execution halted
