UGENE
  1. UGENE
  2. UGENE-3588

Getting a consensus sequence from a reference sequence and a set of variations

    Details

    • Type: New Feature New Feature
    • Status: Open Open
    • Priority: Major Major
    • Resolution: Unresolved
    • Affects Version/s: 1.14.1
    • Fix Version/s: None
    • Component/s: Workflow
    • Affect Type:
      Userdefined

      Description

      Create a workflow element that gets a sequence and a set of variations as input and outputs a sequences made of them. Use tool "vcf2fq" from vcfutils to do this.
      Create 2 workflow samples:
      1) Read Sequence + Read Variations > Element > Write Sequence
      2) Read Assembly + Read Sequence > Call Variants > Element > Write Sequence

      See also: http://ugene.unipro.ru/forum/YaBB.pl?num=1412585219

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          People

          • Assignee:
            Unassigned
            Reporter:
            Olga Golosova
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            Dates

            • Created:
              Updated: