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  1. UGENE
  2. UGENE-3824

BWA-MEM status on Windows is not clear

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: 1.15
    • Fix Version/s: 1.15.1
    • Component/s: None
    • Labels:
      None
    • Environment:

      Windows

    • Tests Type:
      Functional/Unit
    • Sprint:
      DEV-11/12/2014, DEV-25/12/2014
    • Affect Type:
      Userdefined

      Description

      See also: UGENE-3823. I launched the described workflow sample and it finished with an error. The problem is in the BWA element (BWA-MEM algorithm is used). It may be a Windows-specific problem.

      Please verify BWA on Windows, fix it, if it is broken, or at least replace it with Bowtie2 in all NGS sample workflows.
      Note that in the later case the workflows' descriptions must also be fixed.

      Also, status of the tool must be clarified on http://ugene.unipro.ru/external.html

      Currently, it is not checked in the tools table, but is available in the Windows FULL x64 package. At least it was there when I installed UGENE 1.15 over the previous UGENE version.

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            Assignee:
            artyom_s Artyom Savchenko
            Reporter:
            oigl Olga Golosova
            Assigned Tester:
            German Grekhov
            Watchers:
            2 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved:

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                Original Estimate - 4 hours
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                Remaining:
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