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  1. UGENE
  2. UGENE-5674

WD: the lack of memory on the disk results in the deletion of the input files

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Critical
    • Resolution: Fixed
    • Affects Version/s: 1.26.1
    • Fix Version/s: 1.27
    • Component/s: NGS, Workflow
    • Labels:
    • Environment:

      Windows 64

    • Story Points:
      3
    • Epic Link:
    • Sprint:
      DEV-27-8
    • Affect Type:
      Userdefined

      Description

      Scenario

      1. Open the "Workflow Designer" tab in the UGENE Application Settings.
      2. Specify the output workflow folder so that there is no enough space on the disk. The free space should be < 5 GB.
      3. Load the attached workflow.
      4. Set "R1_cutadapted.fastq.trimmed.fastq" custom file for "Read FASTQ file with reads1".
      5. Set "R2_cutadapted.fastq.trimmed.fastq" custom file for "Read FASTQ file with reads2".
      6. Set "data/samples/FASTA/human_T1.fa" for "Align Reads with BWA MEM".
      7. Run the workflow.
        Expected state:
        After 8-12 min (when free memory runs out) an error occurs:

        Subtask "Filter unpaired reads task" is failed: Writing error

      8. Find the input FASTQ files on the disk.
        Expected state: two input FASTQ files are still on the disk.
        Actual state: the FASTQ files were unexpectedly deleted from the disk!

        Attachments

          Activity

            People

            Assignee:
            dsukhomlinov Dmitrii Sukhomlinov
            Reporter:
            s.samoilenko Svetlana Samoilenko
            Assigned Tester:
            Eugenia Pushkova [X] (Inactive)
            Watchers:
            2 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: