Uploaded image for project: 'UGENE'
  1. UGENE
  2. UGENE-5783

Parsing error on exporting annotation to the GTF format

    XMLWordPrintable

    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 1.27
    • Fix Version/s: None
    • Component/s: Basic-Nucl, Basic-Other
    • Labels:
    • Story Points:
      3
    • Sprint:
      DEV-28-2
    • Affect Type:
      Userdefined

      Description

      Affected test:
      GUITest_common_scenarios_annotations_test_0011_3.

      Scenario:

      1. Open "samples/FASTA/human_T1.fa"
      2. Create an annotation, set e.g. "ann" annotation name and "200..300" region.
      3. Add "gene_id" and "transcript_id" qualifiers.
      4. Export the annotation to the GTF format. Make sure the "Add to project" option is checked in the export dialog.
        Expected state: The export has finished without errors. The document has been added to the project.
        Actual state:
        [TRACE][11:11] GTF parsing error: unexpected value of the "feature" value "ann" at line 1!
        [ERROR][11:11] GTF parsing error: one or more errors occurred while 
        parsing the input file, see TRACE log for details!
        

      If the "Add to project" option is not checked, the export works fine.

        Attachments

          Activity

            People

            Assignee:
            yalgaer Yuliya Algaer
            Reporter:
            s.samoilenko Svetlana Samoilenko
            Assigned Tester:
            Dmitrii Sukhomlinov
            Watchers:
            4 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: