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  1. UGENE
  2. UGENE-6048

"Output file" parameter for classification elements

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Critical
    • Resolution: Fixed
    • Affects Version/s: virogenesis
    • Fix Version/s: 1.31
    • Component/s: NGS, Workflow

      Description

      Add a new "Output file" parameter to the following elements:

      • "Classify sequences with Kraken"
      • "Classify sequences with CLARK"
      • "Classify sequences with DIAMOND"

      The parameter description should be the following:

      Specify the output file name.
      

      In GUI it should be a line edit with the browse button. The value is mandatory ("Required"). By default, the names are generated from the input file name like that:

      • input file name_Kraken_classification.txt
      • input file name_CLARK_classification.csv
      • input file name_DIAMOND_classification.txt

      The data are stored in the workflow output folder by default.

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              Assignee:
              atiunov Aleksey Tiunov [X] (Inactive)
              Reporter:
              oigl Olga Golosova
              Assigned Tester:
              Eugenia Pushkova [X] (Inactive)
              Watchers:
              2 Start watching this issue

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                Created:
                Updated:
                Resolved: