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Type: Bug
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Status: Closed
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Priority: Major
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Resolution: Won't Fix
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Affects Version/s: None
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Fix Version/s: None
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Component/s: None
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Labels:None
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Affect Type:Userdefined
If CLARK can't find a database appropriate to the options user set, it tries to build a new database. If the sequences database is supposed to be build from is missing, there are messages in the CLARK output:
The program did not find the database files for the provided settings and reference sequences. The program will build them.
Starting the creation of the database of targets specific 27-mers from input files...
No such file or directory
Failed to open ../../refseq/viral/viral.1.1.genomic.fna.gz
No such file or directory
Failed to open ../../refseq/viral/viral.1.1.genomic.fna.gz
No such file or directory
Failed to open ../../refseq/viral/viral.1.1.genomic.fna.gz
No such file or directory
Failed to open ../../refseq/viral/viral.1.1.genomic.fna.gz
No such file or directory
Parse the output to be able to show warnings about missing original sequences on the dashboard.