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  1. UGENE
  2. UGENE-6235

Digestion with Exp3I at a circular sequence beginning/end

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: 1.31
    • Fix Version/s: 1.32
    • Component/s: Basic-Nucl
    • Labels:
    • Tests Type:
      GUI automatic
    • Sprint:
      DEV-32-1, DEV-32-3
    • Affect Type:
      Userdefined

      Description

      This problem was found during solving of the UGENE-6232 issue.

      Get a sequence from the above-mentioned issue and find a "Esp3I" restriction site.

      If you open REBASE info about this site, you will see, that this site has a 4-chars overhang. In case of the current sequence, the overhang has only 2 chars from the beginning of the sequence and the first sticky end at the 0-position. But, 2 more chars for this overhang should be highlighted from the end of sequence and the above-mentioned sticky end should be at the 'sequenceLength - 2' position.

      In case of non-circular view, the behavior shouldn't be changed. Notice, that any sequence can be declared as circular or not in the project tree view, so, in case of changing of this option, restriction sites should be reculculated.

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              Assignee:
              dsukhomlinov Dmitrii Sukhomlinov
              Reporter:
              dsukhomlinov Dmitrii Sukhomlinov
              Assigned Tester:
              Aleksey Tiunov [X] (Inactive)
              Watchers:
              4 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: