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  1. UGENE
  2. UGENE-6248

Building CLARK database and spaces in paths

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Critical
    • Resolution: Fixed
    • Affects Version/s: 1.31
    • Fix Version/s: 1.32
    • Component/s: NGS, Workflow
    • Labels:
    • Environment:

      macOS, Linux 64-bit

    • Story Points:
      3
    • Sprint:
      DEV-32-2, DEV-32-3, DEV-32-4, DEV-32-7
    • Affect Type:
      Userdefined

      Description

      I've installed UGENE on macOS, the *.app file name had space characters ("Unipro UGENE VIRO"). When I tried to build CLARK database, the workflow result was "successful", but the database was not created. The error log on the dashboard had an error:

      /Volumes/External/Unipro UGENE VIRO.app/Contents/MacOS/tools/clark-1.2.4/builddb.sh: line 64: /Volumes/External/Unipro: No such file or directory

      Fix the issue. Check other scenarios. So, at least the following scenarios should be covered:

      1. Space character in the UGENE installation path.
      2. Space character in the UGENE installation path in the application name (if it matters for macOS).
      3. Space character in an input file path.
      4. Space character in an output database file.
      5. Space character in the temporary folder (if it is used).

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          Activity

            People

            Assignee:
            atiunov Aleksey Tiunov [X] (Inactive)
            Reporter:
            oigl Olga Golosova
            Assigned Tester:
            Svetlana Samoilenko
            Watchers:
            2 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: