Uploaded image for project: 'UGENE'
  1. UGENE
  2. UGENE-852

End of region inside a chunk in getSequenceData function

    XMLWordPrintable

    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 1.10.2
    • Fix Version/s: 1.10.3
    • Component/s: Basic-Other
    • Labels:
      None
    • Affect Type:
      Userdefined

      Description

      The problem is in the following function:
      QByteArray SQLiteSequenceDbi::getSequenceData(const U2DataId& sequenceId, const U2Region& region, U2OpStatus& os)

      When a sequence is long enough and the region is specified that ends inside a chunk (for example the chunks are 0..1048576, 1048576..2097152 and the region is 1000000..2000000), then redundant nucleotides are read.

      A set of unit tests are required for this function.

        Attachments

          Activity

            People

            Assignee:
            oigl Olga Golosova
            Reporter:
            oigl Olga Golosova
            Watchers:
            0 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: