#@UGENE_WORKFLOW



workflow "New workflow"{

    trimmomatic {
        type:trimmomatic;
        name:"Improve Reads with Trimmomatic";
        generate-log:true;
        output-url:"";
        trimming-steps:"'ILLUMINACLIP:\'C:\\Program Files\\Unipro UGENE\\data\\adapters\\illumina\\TruSeq3-SE.fa\':2:30:10','HEADCROP:11'";
    }
    get-pe-reads-list {
        type:get-pe-reads-list;
        name:"Read FASTQ Files with PE Reads";
        url1 {
            dataset:"Dataset 1";
            file:"C:/Program Files/Unipro UGENE/data/samples/FASTQ/eas.fastq";
        }
        url2 {
            dataset:"Dataset 1";
            file:"C:/Program Files/Unipro UGENE/data/samples/FASTQ/eas.fastq";
        }
    }

    .actor-bindings {
        get-pe-reads-list.out->trimmomatic.in
    }

    get-pe-reads-list.reads-url1->trimmomatic.in.reads-url1

    .meta {
        visual {
            get-pe-reads-list {
                pos:"-600 -540";
                style:ext;
                bg-color-ext:"0 128 128 64";
                out.angle:360;
            }
            trimmomatic {
                pos:"-330 -540";
                style:ext;
                bg-color-ext:"0 128 128 64";
                in.angle:180;
                out.angle:360;
            }
            get-pe-reads-list.out->trimmomatic.in {
                text-pos:"-35 -27";
            }
        }
    }
}