LOCUS       NC_001363               5833 bp    ss-RNA  linear   VRL 14-MAY-2019
DEFINITION  Murine sarcoma virus, complete genome.
ACCESSION   NC_001363
VERSION     NC_001363.1  GI:9626100
KEYWORDS    oncogene; polyprotein; unidentified reading frame.
SOURCE      Murine sarcoma virus.
  ORGANISM  Murine sarcoma virus
            Viruses; Retroid viruses; Retroviridae; Mammalian type C
            retroviruses; 1-Mammalian type C virus group.
REFERENCE   1  (bases 1 to 5833)
  AUTHORS   Van Beveren,C., van Straaten,F., Galleshaw,J.A. and Verma,I.M.
  TITLE     Nucleotide sequence of the genome of a murine sarcoma virus
  JOURNAL   Cell 27 (1 Pt 2), 97-108 (1981)
  MEDLINE   82115347
   PUBMED   6173134
COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
            reference sequence was derived from V01185.
BASE COUNT     1427 a   1673 c   1484 g   1249 t
UNIMARK     NC_001363 features
            NC_001363
FEATURES             Location/Qualifiers
     scRNA           1..5833
                     /organism="Murine sarcoma virus"
                     /db_xref="taxon:11802"
     misc_feature    2..590
                     /note="5' terminal repeat"
     CDS             1042..2658
                     /codon_start=1
                     /product="gag polyprotein"
                     /protein_id="NP_040335.1"
                     /db_xref="GI:9626101"
                     /db_xref="SWISS-PROT:P03334"
                     /translation="MGQTVTTPLSLTLDHWKDVERLAHNQSVDVKKRRWVTFCSAEWP
                     TFNVGWPRDGTFNRDLITQVKIKVFSPGPHGHPDQVPYIVTWEALAFDPPPWVKPFVH
                     PKPPPPLLPSAPSLPLEPPLSTPPQSSLYPALTPSLGAKPKPQVLSDSGGPLIDLLTE
                     DPPPYRDPRPPPSDRDGDSGEATPAGEAPDPSPMASRLRGRREPPVADSTTSQAFPLR
                     TGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLGT
                     LLTGEEKQRVLLEARKAVRGDDGRPTQLPNEVDAAFPLERPDWEYTTQAGRNHLVHYR
                     QLLIAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETN
                     VSMSFIWQSAPDIGRKLERLEDLRNKTLGDLVREAERIFNKRETPEEREERIRREREE
                     KEERRRTEDEQKEKERDRRRHREMSRLLATVVSGQRQDRQEGERRRSQLDCDQCTYCE
                     EQGHWAKDCPKRPRGPRGPRPQTSLLTLDD"
     CDS             join(2970..3413,3412..3873)
                     /note="Predicted by GeneMark; artificial frameshift"
                     /codon_start=1
                     /product="pol polyprotein fragment"
                     /protein_id="NP_597742.2"
                     /db_xref="GI:22507278"
                     /translation="MVAAIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNA
                     RMTHYQALLLDTDRVQFRPVVALNPATLLPLPEKGLQHNCLDILAEAHGTRPDLTDQP
                     LPDADHTWYTDGSSLLQEGQRKAGAAVTTETEKPSQPRKKTAKVVNIFPRFGMLQVLG
                     TDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERINRTIKETLTKLTLATGSR
                     DWVLLLPLALYRARNTPGPHGLTPYEILCGAPPPLVNFPDPDMTRVTNSPSLQAHIQA
                     LYLVQHEVWRPLAAAYQEQLDHPLD"
     CDS             3875..4999
                     /codon_start=1
                     /product="unknown reading frame (gene x)"
                     /protein_id="NP_040336.1"
                     /db_xref="GI:9626102"
                     /db_xref="SPTREMBL:Q85651"
                     /translation="MAHSTPCSQTSLAVPNHFSLVSHVTVPSEGVMPSPLSLCRYLPR
                     ELSPSVDSRSCSIPLVAPRKAGKLFLGTTPPRAPGLPRRLAWFSIDWEQVCLMHRLGS
                     GGFGSVYKATYHGVPVAIKQVNKCTEDLRASQRSFWAELNIAGLRHDNIVRVVAASTR
                     TPEDSNSLGTIIMEFGGNVTLHQVIYDATRSPEPLSCRKQLSLGKCLKYSLDVVNGLL
                     FLHSQSILHLDLKPANILISEQDVCKISDFGCSQKLQVLRGRQASPPHIGGTYTHQAP
                     EILKGEIATPKADIYSFGITLWQMTTREVPYSGEPQYVQYAVVAYNLRPSLAGAVFTA
                     SLTGKALQNIIQSCWEARGLQRPSAELLQRDLKAFRGTLG"
     CDS             5048..5203
                     /note="Predicted by GeneMark"
                     /codon_start=1
                     /product="spike protein fragment"
                     /protein_id="NP_597744.1"
                     /db_xref="GI:19263358"
                     /translation="MGPLIVLLMILLFGPCILNRLVQFVKDRISVVQALALTQQYHQL
                     KPIEYEP"
     misc_feature    5245..5833
                     /note="3' terminal repeat"
ORIGIN
        1 AAATGAAAGA CCCCACCCGT AGGTGGCAAG CTAGCTTAAG TAACGCCACT TTGCAAGGCA
       61 TGGAAAAATA CATAACTGAG AATAGAAAAG TTCAGATCAA GGTCAGGAAC AAAGAAACAG
      121 CTGAATACCA AACAGGATAT CTGTGGTAAG CGGTTCCTGC CCCGGCTCAG GGCCAAGAAC
      181 AGATGAGACA GCTGAGTGAT GGGCCAAACA GGATATCTGT GGTAAGCAGT TCCTGCCCCG
      241 GCTCGGGGCC AAGAACAGAT GGTCCCCAGA TGCGGTCCAG CCCTCAGCAG TTTCTAGTGA
      301 ATCATCAGAT GTTTCCAGGG TGCCCCAAGG ACCTGAAAAT GACCCTGTAC CTTATTTGAA
      361 CTAACCAATC AGTTCGCTTC TCGCTTCTGT TCGCGCGCTT CCGCTCTCCG AGCTCAATAA
      421 AAGAGCCCAC AACCCCTCAC TCGGCGCGCC AGTCTTCCGA TAGACTGCGT CGCCCGGGTA
      481 CCCGTATTCC CAATAAAGCC TCTTGCTGTT TGCATCCGAA TCGTGGTCTC GCTGTTCCTT
      541 GGGAGGGTCT CCTCTGAGTG ATTGACTACC CACGACGGGG GTCTTTCATT TGGGGGCTCG
      601 TCCGGGATTT GGAGACCCCT GCCCAGGGAC CACCGACCCA CCACCGGGAG GTAAGCTGGC
      661 CAGCAACTTA TCTGTGTCTG TCCGATTGTC TAGTGTCTAT GTTTGATGTT ATGCGCCTGC
      721 GTCTGTACTA GTTAGCTAAC ATGCTCTGTA TCTGGCGGAC CCGTGGTGGA ACTGACGAGT
      781 TCTGAACACC CGGCCGCAAC CCTGGGAGAC GTCCCAGGGA CTTTGGGGGC CGTTTTTGTG
      841 GCCCGACCTG AGGAAGGGAG TCGATGTGGA ATCCGACCCC GTCAGGATAT GTGGTTCTGG
      901 TAGGAGACGA GAACCTAAAA CAGTTCCCGC CTCCGTCTGA ATTTTTGCTT TCGGTTTGGA
      961 ACCGAAGCCG CGCGTCTTGT CTGCTGCAGC ATCGTTCTGT GTTGTCTCTG TCTGACTGTG
     1021 TTTCTGTATT TGTCTGAAAA TATGGGCCAG ACTGTTACCA CTCCCTTAAG TTTGACCTTA
     1081 GATCACTGGA AAGATGTCGA GCGGCTCGCT CACAACCAGT CGGTAGATGT CAAGAAGAGA
     1141 CGTTGGGTTA CCTTCTGCTC TGCAGAATGG CCAACCTTTA ACGTCGGATG GCCGCGAGAC
     1201 GGCACCTTTA ACCGAGACCT CATCACCCAG GTTAAGATCA AGGTCTTTTC ACCTGGCCCG
     1261 CATGGACACC CAGACCAGGT CCCCTACATC GTGACCTGGG AAGCCTTGGC TTTTGACCCC
     1321 CCTCCCTGGG TCAAGCCCTT TGTACACCCT AAGCCTCCGC CTCCTCTTCT TCCATCCGCG
     1381 CCGTCTCTCC CCCTTGAACC TCCTCTTTCG ACCCCGCCTC AATCCTCCCT TTATCCAGCC
     1441 CTCACTCCTT CTTTGGGCGC CAAACCTAAA CCTCAAGTTC TTTCTGACAG TGGGGGGCCG
     1501 CTCATCGACC TACTTACAGA AGACCCCCCG CCTTATAGGG ACCCAAGACC ACCCCCTTCC
     1561 GACAGGGACG GAGATAGTGG AGAAGCGACC CCTGCGGGAG AGGCACCGGA CCCCTCCCCA
     1621 ATGGCATCTC GCCTGCGTGG GAGACGGGAG CCCCCTGTGG CCGACTCCAC TACCTCGCAG
     1681 GCATTCCCCC TCCGCACAGG AGGAAACGGA CAGCTTCAAT ACTGGCCGTT CTCCTCTTCT
     1741 GACCTTTACA ACTGGAAAAA TAATAACCCT TCTTTTTCTG AAGATCCAGG TAAACTGACA
     1801 GCTCTGATCG AGTCTGTCCT CATCACCCAT CAGCCCACCT GGGACGACTG TCAGCAGCTG
     1861 TTGGGGACTC TGCTGACCGG GGAAGAAAAA CAACGGGTGC TCTTAGAGGC TAGAAAGGCG
     1921 GTGCGGGGCG ATGATGGGCG CCCCACTCAA CTGCCCAATG AAGTCGATGC CGCTTTTCCC
     1981 CTCGAGCGCC CAGACTGGGA GTACACCACC CAGGCAGGTA GGAACCACCT AGTCCACTAT
     2041 CGCCAGTTGC TCATAGCGGG TCTCCAAAAC GCGGGCAGAA GCCCCACCAA TTTGGCCAAG
     2101 GTAAAAGGAA TAACACAAGG GCCCAATGAG TCTCCCTCGG CCTTCCTAGA GAGACTTAAG
     2161 GAAGCCTATC GCAGGTACAC TCCTTATGAC CCTGAGGACC CAGGGCAAGA AACTAATGTG
     2221 TCTATGTCTT TCATTTGGCA GTCTGCCCCA GACATTGGGA GAAAGTTAGA GAGGTTAGAA
     2281 GATTTGAGAA ACAAGACGCT TGGAGATTTG GTTAGAGAGG CAGAAAGGAT CTTTAATAAA
     2341 CGAGAAACCC CGGAAGAAAG AGAGGAACGT ATCAGGAGAG AAAGAGAGGA AAAGGAAGAA
     2401 CGCCGTAGGA CAGAGGATGA GCAGAAAGAG AAAGAAAGAG ATCGTAGGAG ACATAGAGAG
     2461 ATGAGCAGGC TATTGGCCAC TGTCGTTAGT GGACAGAGAC AGGATAGACA GGAAGGAGAA
     2521 CGAAGGAGGT CCCAACTCGA CTGCGACCAG TGTACCTACT GCGAAGAACA AGGGCACTGG
     2581 GCTAAAGATT GTCCCAAGAG ACCACGAGGA CCTCGGGGAC CAAGACCCCA GACCTCCCTC
     2641 CTGACCCTAG ATGACTAGGG AGGTCAGGGT CAGGAGCCCC CCCCTGAACC CAGGATAACC
     2701 CTCAAAGTCG GGGGGCAACC CGTCACCTTC CTGGTAGATA CTGGGGCCCA GACCAACAAA
     2761 AGGCCTATCA AGAAATCAAG CAAGTTCTTC TAACTGCCCC AGCCCTGGGG TTGCCAGATT
     2821 TGACTAAGCC CTTTGAACTC TTTGTCGACG AGAAGCAGGG CTACGCCAAA GGTGTCCTAA
     2881 CGCAAAAACT GGGACCTTGG CGTCGGCCGG TGGCCTACCT GTCCAAACAG CTAGACCCAG
     2941 TAGCAGCTGG GTGACCCCCT TGCCTACGGA TGGTAGCAGC CATTGCCGTA CTGACAAAGG
     3001 ATGCAGGCAA GCTAACCATG GGACAGCCAC TAGTCATTCT GGCCCCCCAT GCAGTAGAGG
     3061 CACTAGTCAA ACAACCCCCC GACCGCTGGC TTTCCAACGC CCGGATGACT CACTATCAGG
     3121 CCTTGCTTTT GGACACGGAC CGGGTCCAGT TCAGACCGGT GGTAGCCCTG AACCCGGCTA
     3181 CGCTGCTCCC ACTGCCTGAG AAAGGGCTGC AACACAACTG CCTTGATATC CTGGCCGAAG
     3241 CTCATGGAAC CCGACCCGAC CTAACGGACC AGCCGCTCCC AGACGCCGAC CACACCTGGT
     3301 ACACGGATGG AAGCAGTCTT TTACAAGAGG GACAGCGTAA GGCGGGAGCT GCGGTGACCA
     3361 CCGAGACCGA GAAGCCTTCC CAACCAAGAA AAAAAACCGC CAAGGTCGTA AATCTTCCCC
     3421 AGGTTCGGCA TGCTTCAGGT ATTGGGAACT GACAATGGGC CTGCCTTCGT CTCCAAGGTG
     3481 AGTCAGACAG TGGCCGATCT GTTGGGGATT GATTGGAAAT TACATTGTGC ATACAGACCC
     3541 CAAAGCTCAG GCCAGGTAGA AAGAATAAAT AGAACCATCA AGGAGACTTT AACTAAATTA
     3601 ACGCTTGCAA CTGGCTCTAG GGACTGGGTG CTCCTACTCC CCTTAGCCCT GTATCGAGCC
     3661 CGCAACACGC CGGGCCCCCA TGGCCTCACC CCATATGAGA TCTTATGTGG GGCACCCCCG
     3721 CCCCTTGTAA ACTTCCCTGA CCCTGACATG ACAAGAGTTA CTAACAGCCC CTCTCTCCAA
     3781 GCTCACATAC AGGCTCTCTA CTTAGTCCAG CACGAAGTCT GGAGACCTCT GGCGGCAGCC
     3841 TACCAAGAAC AACTGGACCA TCCTCTAGAC TGACATGGCG CATTCAACGC CATGCTCCCA
     3901 AACTTCCCTG GCTGTTCCTA ATCATTTCTC CCTAGTGTCT CATGTGACTG TCCCATCTGA
     3961 GGGTGTAATG CCTTCGCCTC TAAGCCTGTG TCGCTACCTC CCTCGTGAGC TGTCGCCATC
     4021 GGTAGACTCG CGGTCCTGCA GCATTCCTTT GGTGGCCCCG AGGAAGGCAG GGAAGCTCTT
     4081 CCTGGGGACC ACTCCTCCTC GGGCTCCCGG ACTGCCACGC CGGCTGGCCT GGTTCTCCAT
     4141 AGACTGGGAA CAGGTATGTC TGATGCATAG GCTGGGCTCT GGAGGGTTTG GCTCGGTGTA
     4201 CAAAGCCACT TACCACGGTG TTCCTGTGGC CATCAAGCAA GTAAACAAGT GCACCGAGGA
     4261 CCTACGTGCA TCCCAGCGGA GTTTCTGGGC TGAACTGAAC ATTGCAGGAC TACGCCACGA
     4321 CAACATAGTT CGGGTTGTGG CTGCCAGCAC GCGCACGCCC GAAGACTCCA ACAGCCTAGG
     4381 TACCATAATC ATGGAGTTTG GGGGCAACGT GACTCTACAC CAAGTCATCT ACGATGCCAC
     4441 CCGCTCACCG GAGCCTCTCA GCTGCAGAAA ACAACTAAGT TTGGGGAAGT GCCTCAAGTA
     4501 TTCCCTAGAT GTTGTTAACG GCCTGCTTTT TCTCCACTCA CAAAGCATTT TGCACTTGGA
     4561 CCTGAAGCCA GCGAACATTT TGATTAGTGA GCAGGACGTT TGTAAGATCA GTGACTTCGG
     4621 CTGCTCCCAG AAGCTGCAGG TTCTGCGGGG CCGGCAGGCG TCCCCTCCCC ACATAGGGGG
     4681 CACGTACACG CACCAAGCTC CGGAGATCCT AAAAGGAGAG ATTGCCACGC CCAAAGCTGA
     4741 CATCTACTCT TTTGGAATCA CCCTGTGGCA GATGACTACC AGAGAGGTGC CTTACTCCGG
     4801 CGAACCTCAG TACGTGCAGT ATGCAGTGGT AGCCTACAAT CTGCGTCCCT CACTGGCAGG
     4861 AGCGGTGTTC ACCGCCTCCC TGACTGGAAA GGCACTGCAG AACATCATCC AGAGCTGCTG
     4921 GGAGGCCCGC GGCCTGCAGA GGCCGAGTGC AGAACTGCTC CAAAGGGACC TCAAGGCTTT
     4981 CCGAGGGACA CTAGGCTGAC TCCATCGAGC CAGTGTAGAG ATAAGCTTTT GTTTCTGTTT
     5041 ATTTTTTATG GGACCCCTTA TTGTACTCCT AATGATTTTG CTCTTCGGAC CCTGCATTCT
     5101 TAATCGATTA GTCCAATTTG TTAAAGACAG GATATCAGTG GTCCAGGCTC TAGCTTTGAC
     5161 TCAACAATAT CACCAGCTGA AGCCTATAGA GTACGAGCCA TAGTTAAAAT AAAAGATTTT
     5221 ATTTAGTCTC CAGAAAAAGG GGGGAATGAA AGACCCCACC CGTAGGTGGC AAGCTAGCTT
     5281 AAGTAACGCC ACTTTGCAAG GCATGGAAAA ATACATAACT GAGAATAGAA AAGTTCAGAT
     5341 CAAGGTCAGG AACAAAGAAA CAGCTGAATA CCAAACAGGA TATCTGTGGT AAGCGGTTCC
     5401 TGCCCCGGCT CAGGGCCAAG AACAGATGAG ACAGCTGAGT GATGGGCCAA ACAGGATATC
     5461 TGTGGTAAGC AGTTCCTGCC CCGGCTCGGG GCCAAGAACA GATGGTCCCC AGATGCGGTC
     5521 CAGCCCTCAG CAGTTTCTAG TGAATCATCA GATGTTTCCA GGGTGCCCCA AGGACCTGAA
     5581 AATGACCCTG TACCTTATTT GAACTAACCA ATCAGTTCGC TTCTCGCTTC TGTTCGCGCG
     5641 CTTCCGCTCT CCGAGCTCAA TAAAAGAGCC CACAACCCCT CACTCGGCGC GCCAGTCTTC
     5701 CGATAGACTG CGTCGCCCGG GTACCCGTAT TCCCAATAAA GCCTCTTGCT GTTTGCATCC
     5761 GAATCGTGGT CTCGCTGTTC CTTGGGAGGG TCTCCTCTGA GTGATTGACT ACCCACGACG
     5821 GGGGTCTTTC ATT
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