[#UGENE-3588] Getting a consensus sequence from a reference sequence and a set of variations

[UGENE-3588] Getting a consensus sequence from a reference sequence and a set of variations Created: 07/Oct/14 Updated: 20/Jun/21 Resolved: 20/Jun/21
Status:	Closed
Project:	UGENE
Component/s:	Workflow
Affects Version/s:	1.14.1
Fix Version/s:	None

Type:

New Feature

Priority:

Major

Reporter:

Olga Golosova

Assignee:

Unassigned

Resolution:

Won't Fix

Labels:

NGS, minor_voting, request

Remaining Estimate:

Not Specified

Time Spent:

Not Specified

Original Estimate:

Not Specified

Affect Type:

Userdefined

Description

Create a workflow element that gets a sequence and a set of variations as input and outputs a sequences made of them. Use tool "vcf2fq" from vcfutils to do this.
Create 2 workflow samples:
1) Read Sequence + Read Variations > Element > Write Sequence
2) Read Assembly + Read Sequence > Call Variants > Element > Write Sequence

Generated at Sat Apr 20 14:53:35 NOVT 2024 using Jira 8.5.0#805000-sha1:facbf8be6a56ed8ab71dea158b6e159962506101.

[UGENE-3588] Getting a consensus sequence from a reference sequence and a set of variations Created: 07/Oct/14 Updated: 20/Jun/21 Resolved: 20/Jun/21