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  1. UGENE
  2. UGENE-427

Assembly coverage calculation is broken

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: 1.9.3
    • Fix Version/s: 1.9.4
    • Component/s: NGS
    • Labels:
    • Affect Type:
      Userdefined

      Description

      Open chrM contig from MCF7_dir100.bam.

      1. Look at assembly-coverage.png. Welcome screen shows 3 million of reads per region, however, there are only 300 000 reads in the whole chromosome.
      2. Look at assembly-5000.png. The browser shows coverage 5000 (and the hint shows "row 5000"). It's wrong info for this BAM.

        Attachments

        1. assembly-5000.png
          21 kB
          Ivan Efremov
        2. assembly-coverage.PNG
          34 kB
          Ivan Efremov

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              Assignee:
              baskanov Anton Baskanov
              Reporter:
              iefremov Ivan Efremov
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                Dates

                Created:
                Updated:
                Resolved: