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  1. UGENE
  2. UGENE-4511

MUSCLE align fails with an meaningless error in GUI and crashes in WD

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    Details

    • Story Points:
      5
    • Tests Type:
      Untestable
    • Sprint:
      DEV-23-1
    • Affect Type:
      Userdefined

      Description

      Scenario to reproduce 1:

      1. Open "data/samples/CLUSTALW/ty3.aln.gz".
      2. Select {Align -> Align sequences to profile with MUSCLE...}

        item in the context menu.

      3. Wait for a task finish.
      4. Select {Align -> Align with MUSCLE...}

        item in the context menu.
        Expected state: the msa is successfully aligned.
        Current state: the task fails with an error:

        [ERROR][18:39] Task {MUSCLE align 'ty3.aln.gz'} finished with error: Subtask {Workflow wrapper 'MUSCLE align 'ty3.aln.gz''} is failed: Subtask {Run workflow: align} is failed: Subtask {Read document: 'N87489.fasta'} is failed: Document is empty.

      There is another error in debug build:

      [ERROR][18:24] Task {MUSCLE align 'ty3.aln.gz'} finished with error: Subtask {Workflow wrapper 'MUSCLE align 'ty3.aln.gz''} is failed: Subtask {Run workflow: align} is failed: Subtask {Workflow process} is failed: The process '/Users/atiunov/root/projects/clear/clear_tr/installer/macosx/debug_bundle/ugeneuid.app/Contents/MacOS/ugenecld' crashed some time after starting successfully

      Scenario 2:

      1. Open an attached alignment
      2. Align it with MUSCLE
        Current state: there is an error in the log

        Document is empty

      3. Open WD sample "Align with MUSCLE" and set input data to the same file
      4. Run the workflow
        Current state: UGENE crashes

      Also we have crash report with same error: http://ugene.net/ugenecrashes?id=8306

        Attachments

        1. reference.aln
          397 kB
          Eugenia Pushkova [X]

          Activity

            People

            Assignee:
            ggrekhov German Grekhov
            Reporter:
            atiunov Aleksey Tiunov [X] (Inactive)
            Assigned Tester:
            Denis Kandrov
            Watchers:
            3 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: