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  1. UGENE
  2. UGENE-6226

UGENE genome aligner provides inconsistent results

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 1.31
    • Fix Version/s: None
    • Component/s: NGS
    • Labels:
    • Story Points:
      7
    • Affect Type:
      Userdefined

      Description

      Scenario:

      1. Open "reads.fa"
      2. Select 'Map reads to a reference sequence'.
      3. Select "reference.fa".
      4. Click 'Start'.
        Current result: in my environment sometimes I see an error message that alignment can't be made and sometimes a valid Assembly Browser window with an alignment is opened.

      Looks like a concurrency issue in the algorithm.

        Attachments

        1. reads.fa
          0.1 kB
        2. reference.fa
          0.1 kB

          Issue Links

          relates to

          Bug - A problem which impairs or prevents the functions of the product. UGENE-6229 Reference sequence is not recognized

          • Major - Major loss of function.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. UGENE-6230 Assembly name for align to reference algorithm

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              yalgaer Yuliya Algaer
              Reporter:
              yalgaer Yuliya Algaer
              Assigned Tester:
              Dmitrii Sukhomlinov
              Watchers:
              2 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: