Uploaded image for project: 'UGENE'
  1. UGENE
  2. UGENE-6642

"←  " message in log when mapping Sanger reads

    XMLWordPrintable

    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Won't Fix
    • Affects Version/s: 33
    • Fix Version/s: None
    • Component/s: Basic-Nucl
    • Affect Type:
      Userdefined

      Description

      Scenario:

      1. Set log level to "DETAILS".
      2. Open "Tools > Sanger data analysis > Map reads to reference".
      3. Input an appropriate reference and reads, click "Map".
        Current result: In the log there is a message "Reads accepted by the mapper". After that there are messages for the mapped reads that contain strange text with 2190 code and nbsp.

      Source code
      The problem is in the method QVariantMap AlignToReferenceBlastWorker::getResult(Task *task, U2OpStatus &os) const in AlignToReferenceBlastWorker.cpp:

      foreach(pair, acceptedReads) {
              algoLog.details((pair.second.second ? "←  " : "→  ") + pair.first);
          }
      

      Replace a string with 2190 with "[REVERSE] ", a string with 2192 with "[FORWARD] ".

        Attachments

          Activity

            People

            Assignee:
            Unassigned
            Reporter:
            oigl Olga Golosova
            Watchers:
            0 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: