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  1. UGENE
  2. UGENE-677

Bug with import of unmapped reads

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 1.9.8
    • Fix Version/s: 1.10
    • Component/s: NGS
    • Labels:
    • Affect Type:
      Userdefined

      Description

      1. Open the file bamExample.bam.
      2. Check the box 'Import unmapped reads' and import the file.
      An error occurs:
      [ERROR][14:39] Subtask

      {Adding document to project: bamExample.bam}

      is failed: Subtask

      {BAM/SAM file import: bamExample.bam}

      is failed: Subtask

      {Convert BAM to UGENE database (bamExample.bam.ugenedb)} is failed: Converting assembly from bamExample.bam to bamExample.bam.ugenedb failed: Invalid reference id: 28881Document was removed
      [ERROR][14:39] Task {Loading documents} finished with error: Subtask {Opening view for document: bamExample.bam} is failed: Subtask {Adding document to project: bamExample.bam} is failed: Subtask {BAM/SAM file import: bamExample.bam} is failed: Subtask {Convert BAM to UGENE database (bamExample.bam.ugenedb)}

      is failed: Converting assembly from bamExample.bam to bamExample.bam.ugenedb failed: Invalid reference id: 28881Document was removed

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            Assignee:
            inovikov Ivan Novikov
            Reporter:
            yalgaer Yuliya Algaer
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              Dates

              Created:
              Updated:
              Resolved: