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  1. UGENE
  2. UGENE-7445

SAFE_POINT on "Extract consensus from assemby" workflow with GFF output

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    Details

    • Type: Bug
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: None
    • Labels:
    • Affect Type:
      Userdefined

      Description

      Scenario:

      1. Open Tools->NGS->"Extract consensus from assemby" workflow
      2. Set input assembly file to  common_date/ugenegb/1.bam.ugenegb
      3. Set document format="ugenegb"
      4. Run
        Error: Unknown data format for writing: usqlite
      5. Set document format="GFF"
      6. Run
        Trying to recover from error: Add sequence to document: empty length at C:\BuildAgent\work\release\ugene\src\plugins\workflow_designer\src\library\DocWorkers.cpp:226

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          relates to

          Bug - A problem which impairs or prevents the functions of the product. UGENE-7236 SAFE_POINT on extracting consenus from assembly in GFF format

          • Critical - Crashes, loss of data, severe memory leak.
          • Tested

            Activity

              People

              Assignee:
              dsukhomlinov Dmitrii Sukhomlinov
              Reporter:
              s.samoilenko Svetlana Samoilenko
              Watchers:
              1 Start watching this issue

                Dates

                Created:
                Updated: