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  1. UGENE
  2. UGENE-7687

[Samtools] Crash bwa-mem Unicode tmp

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    Details

    • Tests Type:
      Functional/Unit
    • Sprint:
      DEV-45-3, DEV-45-4, DEV-45-5
    • User Requests Number:
      1
    • Affect Type:
      Userdefined

      Description

      Created from crash report 2069.

      1. Create a folder "苍天垂泪".
      2. Open Preferences.
      3. Open the "Directories" setting, set the created folder as "Temporary files".
      4. Click OK. 
      5. Run Tools->NGS data analysis->Map reads to reference... The "Map NGS Reads to Reference" dialog appears.
      6. Set:
        1. Mapping tool: BWA-MEM,
        2. Reference sequence: data/samples/Genbank/CVU55762.gb (dir must be writable),
        3. Short reads:
          1. _common_data/cmdline/custom-script-worker-functions/fastq_quality_trimmer/fastq1_res1.fastq,
          2. _common_data/cmdline/custom-script-worker-functions/fastq_quality_trimmer/fastq1_res2.fastq.
      7. Click Start. The "DNA Assembly" dialog appears:
        These files have the incompatible format:
        
        C:/Users/User/ugene/data/samples/Genbank/CVU55762.gb [genbank]
        
        Do you want to convert the files and run the aligner?
        
      8. Click Yes. The "Dna assembly" task has started.
        Expected: the task completed successfully, UGENE generated a non-empty output file (data/samples/Genbank/CVU55762.sam by default).
        Current state: crash.

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              Assignee:
              yalgaer Yuliya Algaer
              Reporter:
              biserova Evelina
              Assigned Tester:
              Svetlana Samoilenko
              Watchers:
              2 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: