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  1. UGENE
  2. UGENE-7819

UGENE fails to open BAM file

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46
    • Fix Version/s: 47
    • Component/s: None
    • Labels:
      None
    • Sprint:
      DEV-47-1
    • Affect Type:
      Userdefined

      Description

      Try to open the attached file: UGENE shows that the BAM can't be opened

      [ERROR][14:06] Subtask {Adding document to project: bam-with-missed-mate.bam} is failed: Subtask {BAM/SAM file import: bam-with-missed-mate.bam} is failed: Subtask {Convert BAM to UGENE database (bam-with-missed-mate.bam)} is failed: Converting assembly from bam-with-missed-mate.bam to bam-with-missed-mate.ugenedb failed: Invalid template length of a sigle-fragment template: 1012 Document was removed.
      [ERROR][14:06] Task {Loading documents} finished with error: Subtask {Opening view for document: bam-with-missed-mate.bam} is failed: Subtask {Adding document to project: bam-with-missed-mate.bam} is failed: Subtask {BAM/SAM file import: bam-with-missed-mate.bam} is failed: Subtask {Convert BAM to UGENE database (bam-with-missed-mate.bam)} is failed: Converting assembly from bam-with-missed-mate.bam to bam-with-missed-mate.ugenedb failed: Invalid template length of a sigle-fragment template: 1012 Document was removed.

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            Assignee:
            yalgaer Yuliya Algaer
            Reporter:
            yalgaer Yuliya Algaer
            Assigned Tester:
            Svetlana Samoilenko
            Watchers:
            1 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: