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  1. UGENE
  2. UGENE-968

Improve logging of genbank parsing errors

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Minor
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 1.12.1
    • Component/s: None
    • Labels:
      None
    • Tests Type:
      Functional/Unit

      Description

      When a genbank file contains errors then the error report is not informative. For example, a user opens a file with the following strings:
      FEATURES Location/Qualifiers
      source -1..12766

      and he sees the error: "Error parsing location". But he is sure that the file is correct, because he has got this file from some annotating program, for example.

      Maybe, it will be good to inform users more exact about the errors (e.g. "-1..12766 is an incorrect location. ..." or something like that).

        Attachments

        1. test.gb
          0.2 kB
          German Grekhov

          Activity

            People

            Assignee:
            artyom_s Artyom Savchenko
            Reporter:
            ggrekhov German Grekhov
            Assigned Tester:
            German Grekhov
            Watchers:
            1 Start watching this issue

              Dates

              Created:
              Updated:
              Resolved: