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  1. UGENE
  2. UGENE-5585

Regression: align sequences to profile by MUSCLE does not work

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Critical
    • Resolution: Cannot Reproduce
    • Affects Version/s: master
    • Fix Version/s: None
    • Component/s: Basic-MSA
    • Labels:
      None
    • Affect Type:
      Userdefined

      Description

      Issue is not reproducible on release 1.26.1

      1. Open an alignment ../common_data/scenarios/_regression/4804/standard_amino.aln
      2. From context menu select Align-> Align sequences to profile with MUSCLE
      3. Select extended amino: ../common_data/scenarios/_regression/4804/ext_amino.fa
      4. Push Open
      Expected state:

      The alignment has been modified, so that its alphabet has been switched from 'ext_amino.fa' " to 'standard_amino.aln'. Use "Undo", if you'd like to restore the original alignment.

      Actual state:

      'MUSCLE align 'ext_amino.fa' by profile 'standard_amino.aln'' task failed: Subtask

      Unknown macro: {MUSCLE add to profile 'standard_amino.aln'}

      is failed: Failed to apply the result of Muscle

      Issue was detected by regression gui tests:
      GUITest_regression_scenarios_test_4833_3
      GUITest_regression_scenarios_test_4833_4
      GUITest_regression_scenarios_test_4833_5

      Affected XML tests:
      uMuscle parallel plugin tests (12 tests)
      uMuscle serial plugin tests (12 tests)

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              Assignee:
              Unassigned
              Reporter:
              s.samoilenko Svetlana Samoilenko
              Watchers:
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                Dates

                Created:
                Updated:
                Resolved: