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  1. UGENE
  2. UGENE-5834

Integrate Kraken as an external tool

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    Details

    • Type: New Feature
    • Status: Closed
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: 1.28
    • Fix Version/s: 1.31
    • Component/s: Basic-Other, NGS
    • Labels:
    • Environment:

      Linux, Mac OS X

    • Story Points:
      5
    • Epic Link:
    • Sprint:
      DEV-29-1, DEV-29-2
    • Affect Type:
      Userdefined

      Description

      For now two executable files should be added: "kraken" and "kraken-build". On the "External Tools" page in the Application Settings they should be in a common group called "Kraken".

      Add these tools to the Linux and Mac OS X external tools packages (the tools are not available on Windows).

      Description of the group:

      Kraken is a taxonomic sequence classifier that assigns taxonomic labels to short DNA reads.
      

      Description of the "kraken" executable:

      The "kraken" executable is used to classify a set of sequences. It does this by examining the k-mers within a read and querying a database with those k-mers.
      

      Description of the "kraken-build" executable:

      The "kraken-build" executable is used to build a Kraken database.
      

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              Assignee:
              atiunov Aleksey Tiunov [X] (Inactive)
              Reporter:
              atiunov Aleksey Tiunov [X] (Inactive)
              Assigned Tester:
              Dmitrii Sukhomlinov
              Watchers:
              2 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: