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  1. UGENE
  2. UGENE-6091

VEME 2018 issues

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    Details

    • Type: Epic
    • Status: Closed
    • Priority: Critical
    • Resolution: Fixed
    • Affects Version/s: virogenesis
    • Fix Version/s: 1.31
    • Component/s: NGS, Workflow
    • Labels:
      None
    • Epic Name:
      VEME-2018
    • Affect Type:
      Userdefined

      Description

      • Integrate Trimmomatic, update samples workflows - use Trimmomatic instead of ("Filter by CASAVA header" + "Cut adapter" + "Trim reads by quality").
      • Integrate StringTie.
      • Update SPAdes, modify its dialog, add metaSPAdes.
      • Modify available NGS items in the main menu.
      • Other improvements.

        Attachments

          Issue Links

          relates to

          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. UGENE-5879 VIROGENESIS, Stage 1

          • Blocker - Blocks development and/or testing work, production could not run.
          • Closed

          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. UGENE-5976 VIROGENESIS: problems and user experience improvements connected with data

          • Critical - Crashes, loss of data, severe memory leak.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. UGENE-5080 "Problems" widget doesn't appear on dashboard

          • Major - Major loss of function.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. UGENE-5603 Raw DNA-Seq data processing: one output file on dashboard for several input FASTQ files

          • Major - Major loss of function.
          • Closed

          Epic - Created by Jira Software - do not edit or delete. Issue type for a big user story that needs to be broken down. UGENE-5925 VIROGENESIS, Stage 2

          • Major - Major loss of function.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. UGENE-6115 Change default adapters file in Trimmomatic steps dialog depending on the current library mode

          • Major - Major loss of function.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. UGENE-5600 Incorrect zooming in WD: workflow may disappear

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. UGENE-6116 In "Improve Reads with Trimmomatic" output and log files are merged

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. UGENE-6142 Error on "HEADCROP:111111111" for Trimmomatic ILLUMINACLIP step

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. UGENE-6114 Refactor Cutadapt, add a sample workflow

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. UGENE-6117 Sort workers on a dashboard as in the workflow

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. UGENE-6134 "Trimmomatic steps" parameter parsing

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. UGENE-6150 Added tools should be included into update in online installers

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. UGENE-6131 Adding Trimmomatics step pop-up menu position

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

            Activity

              People

              Assignee:
              oigl Olga Golosova
              Reporter:
              oigl Olga Golosova
              Watchers:
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                Dates

                Created:
                Updated:
                Resolved: